Table 1 |
||||
|
Allergen references and analytical parameters. |
||||
|
Allergen |
Ves v 5 |
Api m 1 |
Phl p 1 |
Cry j 1 |
|
|
||||
|
aka |
pathogenesis-related protein |
phospholipase a2 |
expansin family |
Polysaccharide lyase |
|
Source |
yellow jacket |
honey bee |
timothy grass |
Japanese cedar |
|
No. Residues |
204 |
134 |
240 |
374 |
|
|
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|
Epitopes |
||||
|
No. Subjects |
13 |
20 |
9 |
18 |
|
Peptide length |
12 |
16* |
12 |
15 |
|
Peptide overlap |
9 |
10* |
9 |
10 |
|
Step |
3 |
8* |
3 |
6 |
|
No. Peptides |
65 |
19 |
76 |
69 |
|
Reference |
[2] |
[54] |
[55] |
[56] |
|
|
||||
|
Corex stability |
||||
|
Structure file |
1qnx |
1poc |
1n10 |
Cry j 1 model |
|
Reference |
[53] |
[57] |
to be published |
[58] |
|
Monte Carlo sampling |
no |
no |
no |
yes |
|
Entropy scaling |
0.994 |
0.885 |
0.85 |
1.039 |
|
Structure method |
X-ray |
X-ray |
X-ray |
X-ray |
|
Homology model, template |
no |
no |
no |
yes, 1pxz |
|
|
||||
|
B-factor |
||||
|
Structure file |
1qnx |
1poc |
1n10 |
1pxz |
|
Averaging window size |
15 |
11 |
15 |
15 |
|
1st derivative averaging window size |
9 |
11 |
9 |
9 |
|
|
||||
|
Sequence entropy |
||||
|
No. Homologs aligned |
50 |
15 |
97 |
51 |
|
Range of identity |
24–97% |
11–77% |
21–90% |
10–75% |
|
Strategy for identification |
blast Genbank non-redundant |
blast Swiss-Prot |
blast Swiss-Prot |
blast Swiss-Prot |
|
Averaging window size |
15 |
15 |
15 |
15 |
|
1st derivative averaging window size |
9 |
9 |
9 |
9 |
|
|
||||
|
*average value, peptide series not regular |
||||
|
Melton and Landry Clinical and Molecular Allergy 2008 6:9 doi:10.1186/1476-7961-6-9 |
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